IEEE transactions on medical imaging
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IEEE Trans Med Imaging · Aug 2003
Comparative StudyAnalysis of event-related fMRI data using best clustering bases.
We explore a new paradigm for the analysis of event-related functional magnetic resonance images (fMRI) of brain activity. We regard the fMRI data as a very large set of time series x(i) (t), indexed by the position i of a voxel inside the brain. The decision that a voxel i(o) is activated is based not solely on the value of the fMRI signal at i(o), but rather on the comparison of all time series x(i) (t) in a small neighborhood Wi(o) around i(o). ⋯ These clustering basis functions are selected from large libraries of wavelet packets according to their ability to separate the fMRI time series into the activated cluster and a nonactivated cluster. This principle exploits the intrinsic spatial correlation that is present in the data. The construction of the clustering basis functions described in this paper is applicable to a large category of problems where time series are indexed by a spatial variable.
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IEEE Trans Med Imaging · Aug 2003
Comparative StudySingle-shot MR imaging using trapezoidal-gradient-based Lissajous trajectories.
A novel single-shot trapezoidal-gradient-based Lissajous trajectory is described and implemented on a 3-tesla magnetic resonance (MR) scanner. A feature of this trajectory is that its sampling points are located on a nonequidistant rectangular grid, which permits the usage of one-dimensional optimal algorithms to increase the robustness and speed of image reconstruction. ⋯ Potential artifacts in reconstructed images were investigated and methods for suppressing these artifacts were developed. Experiments on normal subjects at rest and during brain activation were performed to demonstrate the feasibility of the new sequence.
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IEEE Trans Med Imaging · Jul 2003
Comparative StudyActivation detection in fMRI using a maximum energy ratio statistic obtained by adaptive spatial filtering.
An adaptive spatial filtering method is proposed that takes into account contextual information in fMRI activation detection. This filter replaces the time series of each voxel with a weighted average of time series of a small neighborhood around it. The filter coefficients at each voxel are derived so as to maximize a test statistic designed to indicate the presence of activation. ⋯ This approach circumvents the need for a priori assumptions about the exact shape of the HRF. Resting-state experimental fMRI data were used to assess the specificity of the method, showing that the actual false-alarm rate of the proposed method is equal or less than its expected value. Analysis of simulated data and motor task fMRI datasets from six volunteers using the method proposed here showed an improved sensitivity as compared to a conventional test with a similar statistic applied to spatially smoothed data.
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IEEE Trans Med Imaging · Jun 2003
Comparative Study Clinical TrialVolume-preserving nonrigid registration of MR breast images using free-form deformation with an incompressibility constraint.
In this paper, we extend a previously reported intensity-based nonrigid registration algorithm by using a novel regularization term to constrain the deformation. Global motion is modeled by a rigid transformation while local motion is described by a free-form deformation based on B-splines. An information theoretic measure, normalized mutual information, is used as an intensity-based image similarity measure. ⋯ For both constraints, volume preservation improves, and motion artifact correction worsens, as the weight of the constraint penalty term increases. For a given volume change of the contrast-enhancing lesions (2% of the original volume), the incompressibility constraint reduces motion artifacts better than or equal to the smoothness constraint in 13 out of 17 cases (better in 9, equal in 4, worse in 4). The preliminary results suggest that incorporation of the incompressibility regularization term improves intensity-based free-form nonrigid registration of contrast-enhanced MR breast images by greatly reducing the problem of shrinkage of contrast-enhancing structures while simultaneously allowing motion artifacts to be substantially reduced.
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IEEE Trans Med Imaging · May 2003
Comparative StudyVolume registration using needle paths and point landmarks for evaluation of interventional MRI treatments.
We created a method for three-dimensional (3-D) registration of medical images (e.g., magnetic resonance imaging (MRI) or computed tomography) to images of physical tissue sections or to other medical images and evaluated its accuracy. Our method proved valuable for evaluation of animal model experiments on interventional-MRI guided thermal ablation and on a new localized drug delivery system. The method computes an optimum set of rigid body registration parameters by minimization of the Euclidean distances between automatically chosen correspondence points, along manually selected fiducial needle paths, and optional point landmarks, using the iterative closest point algorithm. ⋯ In this case, in vivo rabbit thigh volumes were registered to photographs of ex vivo tissue sections using two needle paths. Mean registration errors were between 0.7 and 1.36 mm over all rabbits, the largest error less than two MR voxel widths. We conclude that our method provides sufficient spatial correspondence to facilitate comparison of 3-D image data with data from gross pathology tissue sections and histology.