Computer methods and programs in biomedicine
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Comput Methods Programs Biomed · Jul 2018
A computerized method for evaluating scoliotic deformities using elliptical pattern recognition in X-ray spine images.
Several studies have evaluated the reproducibility of the Cobb angle for measuring the degree of scoliotic deformities from X-ray spine images, and proposed different geometric models for describing the spinal curvature. The ellipse was shown to be an adequate geometric form, but was not yet applied for the identification and quantification of scoliotic curvatures. The purpose of this study is therefore to propose and validate a novel computerized methodology for the detection of elliptical patterns from X-ray images to evaluate the extent of the underlying scoliotic deformity. ⋯ The results indicate that the proposed computerized methodology is able to reliably reproduce scoliotic curvatures using the geometric parameters of the underlying ellipses. In comparison to conventional approaches, the proposed methodology potentially produces less errors, requires a relatively low observer interaction, takes into account all vertebrae within the observed scoliotic deformity, and allows for both qualitative and quantitative evaluations that may complement the diagnosis, study and treatment of scoliosis.
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Medical image analysis and computer-assisted intervention problems are increasingly being addressed with deep-learning-based solutions. Established deep-learning platforms are flexible but do not provide specific functionality for medical image analysis and adapting them for this domain of application requires substantial implementation effort. Consequently, there has been substantial duplication of effort and incompatible infrastructure developed across many research groups. This work presents the open-source NiftyNet platform for deep learning in medical imaging. The ambition of NiftyNet is to accelerate and simplify the development of these solutions, and to provide a common mechanism for disseminating research outputs for the community to use, adapt and build upon. ⋯ The NiftyNet infrastructure enables researchers to rapidly develop and distribute deep learning solutions for segmentation, regression, image generation and representation learning applications, or extend the platform to new applications.
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Comput Methods Programs Biomed · May 2018
A novel biomedical image indexing and retrieval system via deep preference learning.
The traditional biomedical image retrieval methods as well as content-based image retrieval (CBIR) methods originally designed for non-biomedical images either only consider using pixel and low-level features to describe an image or use deep features to describe images but still leave a lot of room for improving both accuracy and efficiency. In this work, we propose a new approach, which exploits deep learning technology to extract the high-level and compact features from biomedical images. The deep feature extraction process leverages multiple hidden layers to capture substantial feature structures of high-resolution images and represent them at different levels of abstraction, leading to an improved performance for indexing and retrieval of biomedical images. ⋯ We propose a novel and automated indexing system based on deep preference learning to characterize biomedical images for developing computer aided diagnosis (CAD) systems in healthcare. Our proposed system shows an outstanding indexing ability and high efficiency for biomedical image retrieval applications and it can be used to collect and annotate the high-resolution images in a biomedical database for further biomedical image research and applications.
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Comput Methods Programs Biomed · Apr 2018
Assessing mechanical ventilation asynchrony through iterative airway pressure reconstruction.
Respiratory mechanics estimation can be used to guide mechanical ventilation (MV) but is severely compromised when asynchronous breathing occurs. In addition, asynchrony during MV is often not monitored and little is known about the impact or magnitude of asynchronous breathing towards recovery. Thus, it is important to monitor and quantify asynchronous breathing over every breath in an automated fashion, enabling the ability to overcome the limitations of model-based respiratory mechanics estimation during asynchronous breathing ventilation. ⋯ The iterative pressure reconstruction method is capable of identifying asynchronous breaths and improving respiratory mechanics estimation consistency compared to conventional model-based methods. It provides an opportunity to automate real-time quantification of asynchronous breathing frequency and magnitude that was previously limited to invasively method only.