Articles: phenotype.
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Stat Appl Genet Mol · Jan 2005
Computing asymptotic power and sample size for case-control genetic association studies in the presence of phenotype and/or genotype misclassification errors.
It is well established that phenotype and genotype misclassification errors reduce the power to detect genetic association. Resampling a subset of the data (e.g, double-sampling) of genotype and/or phenotype with a gold standard measurement is one method to address this issue. We derive the non-centrality parameter (NCP) for the recently published Likelihood Ratio Test Allowing for Error (LRTae) in the presence of random phenotype and genotype errors. ⋯ For our cost/benefits analysis calculations, results for genotype errors are that double-sampling appears most beneficial (in terms of power gain) when cost of double-sampling is relatively low, irrespective of the proportion of individuals double-sampled. In the presence of phenotype error, there is always power gain using the LRTae method for the parameter settings considered. We have freely available software that performs power and sample size calculations for the LRTae method and cost/benefits analyses comparing power for LRTae and LRTstd methods assuming equal costs.
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Developmental biology · Jun 2004
Comparative StudyZebrafish rx3 and mab21l2 are required during eye morphogenesis.
Two alleles of an eyeless mutant, chokh (chk), were identified in ongoing zebrafish F(3) mutagenesis screens. Morphologically, chk mutants can be identified at 15 h post-fertilization by the failure of optic primordia to evaginate from the forebrain. The chk phenotype appears specific, as marker genes in the forebrain, midbrain, and pineal are expressed in normal temporal, spatial, and circadian patterns. ⋯ We find that expression of mab21l2, mab21l1 and rx2 are specifically absent in the eye field of chk embryos. Knockdown of Mab21l2 by antisense morpholino microinjections partially phenocopies the rx3 mutation, leading to microphthalmia, incomplete eye maturation, and dramatic increases in apoptotic eye progenitors. We propose that mab21l2 is an early downstream effector of rx3 and is critical for survival of eye progenitors.
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Comparative Study
The effect of alternative prey on the dynamics of imperfect Batesian and Müllerian mimicries.
Both Batesian and Müllerian mimicries are considered classical evidence of natural selection where predation pressure has, at times, created a striking similarity between unrelated prey species. Batesian mimicry, in which palatable mimics resemble unpalatable aposematic species, is parasitic and only beneficial to the mimics. By contrast, in classical Müllerian mimicry the cost of predators' avoidance learning is shared between similar unpalatable co-mimics, and therefore mimicry benefits all parties. ⋯ Birds learned to avoid both Müllerian models and mimics irrespective of the availability of alternative prey. However, the rate of avoidance learning of models increased when alternative prey were abundant. This experiment suggests that the availability of alternative prey affects the dynamics of both Müllerian and Batesian mimicry, but in different ways.
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Current biology : CB · May 2004
Comparative StudyCompetence to respond to floral inductive signals requires the homeobox genes PENNYWISE and POUND-FOOLISH.
The transition from vegetative to reproductive development establishes new growth patterns required for flowering. This switch is controlled by environmental and/or intrinsic developmental cues that converge at the shoot apical meristem (SAM). ⋯ These double mutants are completely unable to flower even though the SAM displays morphological and molecular changes that are consistent with having received floral inductive signals. These studies establish a link between the competence to receive floral inductive signals and restructuring of the SAM during floral evocation.