• Jennifer L Quon, Michelle Han, Lily H Kim, Mary Ellen Koran, Leo C Chen, Edward H Lee, Jason Wright, Vijay Ramaswamy, Robert M Lober, Michael D Taylor, Gerald A Grant, Samuel H Cheshier, KestleJohn R WJRW10Department of Neurosurgery, University of Utah School of Medicine, Salt Lake City, Utah; and., EdwardsMichael S BMSB1Department of Neurosurgery, Stanford University School of Medicine.Divisions of11Pediatric Neurosurgery and., and Kristen W Yeom.
• 1Department of Neurosurgery, Stanford University School of Medicine.
• J Neurosurg Pediatr. 2020 Dec 1: 1-8.

ObjectiveImaging evaluation of the cerebral ventricles is important for clinical decision-making in pediatric hydrocephalus. Although quantitative measurements of ventricular size, over time, can facilitate objective comparison, automated tools for calculating ventricular volume are not structured for clinical use. The authors aimed to develop a fully automated deep learning (DL) model for pediatric cerebral ventricle segmentation and volume calculation for widespread clinical implementation across multiple hospitals.MethodsThe study cohort consisted of 200 children with obstructive hydrocephalus from four pediatric hospitals, along with 199 controls. Manual ventricle segmentation and volume calculation values served as "ground truth" data. An encoder-decoder convolutional neural network architecture, in which T2-weighted MR images were used as input, automatically delineated the ventricles and output volumetric measurements. On a held-out test set, segmentation accuracy was assessed using the Dice similarity coefficient (0 to 1) and volume calculation was assessed using linear regression. Model generalizability was evaluated on an external MRI data set from a fifth hospital. The DL model performance was compared against FreeSurfer research segmentation software.ResultsModel segmentation performed with an overall Dice score of 0.901 (0.946 in hydrocephalus, 0.856 in controls). The model generalized to external MR images from a fifth pediatric hospital with a Dice score of 0.926. The model was more accurate than FreeSurfer, with faster operating times (1.48 seconds per scan).ConclusionsThe authors present a DL model for automatic ventricle segmentation and volume calculation that is more accurate and rapid than currently available methods. With near-immediate volumetric output and reliable performance across institutional scanner types, this model can be adapted to the real-time clinical evaluation of hydrocephalus and improve clinician workflow.

6 keywords...

hide…