• Bioinformatics · Jul 2004

    Visualization for genomics: the Microbial Genome Viewer.

    • Robert Kerkhoven, Frank H J van Enckevort, Jos Boekhorst, Douwe Molenaar, and Roland J Siezen.
    • Centre for Molecular and Biomolecular Informatics, University of Nijmegen, P.O. Box 9010, 6500 GL Nijmegen, The Netherlands. R.Kerkhoven@cmbi.kun.nl
    • Bioinformatics. 2004 Jul 22; 20 (11): 1812-4.

    SummaryA Web-based visualization tool, the Microbial Genome Viewer, is presented that allows the user to combine complex genomic data in a highly interactive way. This Web tool enables the interactive generation of chromosome wheels and linear genome maps from genome annotation data stored in a MySQL database. The generated images are in scalable vector graphics (SVG) format, which is suitable for creating high-quality scalable images and dynamic Web representations. Gene-related data such as transcriptome and time-course microarray experiments can be superimposed on the maps for visual inspection.AvailabilityThe Microbial Genome Viewer 1.0 is freely available at http://www.cmbi.kun.nl/MGV

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