• Bioinformatics · Nov 2016

    BioNetGen 2.2: advances in rule-based modeling.

    • Leonard A Harris, Justin S Hogg, José-Juan Tapia, John A P Sekar, Sanjana Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P Sheehan, and James R Faeder.
    • Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
    • Bioinformatics. 2016 Nov 1; 32 (21): 3366-3368.

    Abstract: BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation and analysis of larger and more complex models than previously possible.© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

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